{"id":30,"date":"2007-02-11T00:21:28","date_gmt":"2007-02-11T07:21:28","guid":{"rendered":"http:\/\/www.bigroom.org\/wordpress\/?p=30"},"modified":"2007-02-11T00:25:22","modified_gmt":"2007-02-11T07:25:22","slug":"curse-you-public-library","status":"publish","type":"post","link":"https:\/\/www.bigroom.org\/wordpress\/?p=30","title":{"rendered":"Curse you, public library!"},"content":{"rendered":"<p>Tonight&#8217;s post will be an eclectic one&#8230;<\/p>\n<p>I made the mistake today of heading for what passes for a &#8220;large city&#8221; in my local area in a general need to go somewhere besides my house and the college.  I figured I could browse the local discount bookstore and see if they had anything interesting.<\/p>\n<p>I happened to notice a sign advertising a book sale at the local library.<\/p>\n<p>Why did they have to do this to me?  Have they no decency?  Have they no shame?  Have they no MERCY?<\/p>\n<p>As I previously mentioned, I actually do collect old science (and medical) books.  Unfortunately, I ended up walking out of the library with a whole mess of microbiology books (and one Botany book that I picked up just because it was old &#8211; 1930&#8217;s).  Fortunately, they were cheap.<br \/>\nI was just perusing one of the books I picked up: an old &#8220;Bacteriology&#8221; book[1] from the late 1940&#8217;s.  It&#8217;s fascinating and instructive to see what scientists used to believe was true and what observations led them to believe it.<\/p>\n<p>The introductory chapters of the book include a discussion of taxonomy and the place of &#8220;Schizomycetes&#8221; (meaning bacteria that aren&#8217;t photosynthetic) in the overall scheme of things.  There&#8217;s a discussion that, given what information was available at the time, is perfectly reasonable and explains why bacteria are &#8220;plants&#8221;, just like other fungi (Fungi, you see, are just plants that aren&#8217;t photosynthetic &#8211; or so they explain).  The author gives a classification scheme for plants that divide them into three categories, which roughly equate to &#8220;normal&#8221; plants (with stems and leaves), moss-type plants, and plants that don&#8217;t have roots, leaves, stems, or flowers.  This latter category he broke into two sub-categories &#8211; Algae (including &#8220;Blue-green&#8221; algae, which we now know are actually bacteria) and Fungi.  &#8220;Bacteria&#8221; are listed as one of the categories of Fungi.<\/p>\n<p>The discussion justifying this categorization makes some interesting claims &#8211; some of which are startling to me.  The author claims that some bacteria &#8211; <a title=\"Link to NCBI Taxonomy page for Gluconacetobacter xylinus\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/Taxonomy\/Browser\/wwwtax.cgi?id=28448\"><em>&#8220;Acetobacter xylinum&#8221;<\/em><\/a> have cell-walls that consist of cellulose, just like plants.  (Actually, it would appear this bacterium <em>does<\/em> make cellulose, though I don&#8217;t think it&#8217;s actually a   component of the cell wall &#8211; this is a standard &#8220;Gram-negative&#8221; type ?-proteobacterium).  I had no idea up to this point that there were cellulose-<em>producing<\/em> bacteria.  Interestingly, the author also states<\/p>\n<blockquote><p>&#8220;Some bacteria are said to possess cell walls of chitin, a distinctly animal substance which is the material of horn, hair, hoof, and insect shell&#8221;<\/p><\/blockquote>\n<p>which is completely wrong on every count except for the part about insect shells.  (Horn, hair, and hoof (and fingernail) material is <em>Keratin<\/em>, which is a type of tough protein.  Chitin is actually a <span title=\"A string of simple sugars, much like a protein is a string of amino acids\" class=\"moreinfo\">polysaccharide<\/span>&#8230;and it is what <span title=\"Yeasts are a little bit different\" class=\"moreinfo\">most<\/span> <em>fungal<\/em> cell walls are made of.There are some interesting statements in the section on microscopy as well.  The author claims:<\/p>\n<blockquote><p>&#8220;There seems no doubt that the gram-positive material in bacteria is ribonucleic acid.  Bartholomew and Umbreit[2] have shown that it can be removed by soaking the gram-positive cells in <span title=\"This is a 'bile salt', evidently\" class=\"moreinfo\">sodium choleate<\/span>.  It may be replaced by treating them with magnesium ribonucleate.  Normally gram-negative species will not accept the applied coating.  The specificity of these reactions is shown by the fact that an enzyme, ribonuclease, will remove the gram-positive character (ribonucleic acid) of the cells very quickly.&#8221;<\/p><\/blockquote>\n<p>What the heck?&#8230;  Now I have an urge to see if I can sneak a culture of some kind of <em>Bacillus <\/em> and some RNAse and see how much of this explanation actually matches observation.  (Perhaps I can dig up Bartholomew and Umbreit&#8217;s paper as well).  The author also mentions that nobody has managed to get a good image of a bacterial nucleus, either, which of course is because they don&#8217;t actually have one&#8230;<br \/>\nOne other thing I&#8217;d never heard of:  Proton Microscopy.  According to the author, this technique, apparently first implemented in France in 1948, could theoretically give substantially better resolution than electron microscopy.<\/p>\n<p>Some quick poking around seems to show that this is partly true, and there actually are proton microscopes that get used for some kinds of studies.  However, protons are a heck of a lot harder to &#8220;focus&#8221; and they don&#8217;t seem to have caught on for microbiological work.  They do evidently have some useful properties for doing analysis of what specific elements are in a sample, though[3].<\/p>\n<p>I noticed some other apparent differences in style between the older textbooks and current ones, but I&#8217;ll save that for another time.<\/p>\n<p>I will also at some point go back and re-write the Schizomycete article to include some of the information I&#8217;ve picked up in the last couple of weeks.  Meanwhile &#8211; one more day of &#8220;Just Science&#8221; week!  Looks like I should survive it after all.<\/p>\n<div style=\"font-size: x-small; font-family: monospace\">[1] &#8211; Frobisher, Martin Jr. &#8220;Fundamentals of Bacteriology (Fourth Edition)&#8221;, 1949, W.B Saunders Company, Philadelphia<br \/>\n[2] Bartholemew JW, Umbreit WW, &#8220;Ribonucleic Acid and the Gram Stain&#8221;, J. Bacteriol. 1946, 48:567<br \/>\n[3] &#8220;Microscopy with Protons&#8221; http:\/\/www.innovationmagazine.com\/innovation\/volumes\/v7n1\/coverstory3.shtml (visited 2007-02-10)<\/div>\n","protected":false},"excerpt":{"rendered":"<p>Tonight&#8217;s post will be an eclectic one&#8230; I made the mistake today of heading for what passes for a &#8220;large city&#8221; in my local area in a general need to go somewhere besides my house and the college. I figured I could browse the local discount bookstore and see if they had anything interesting. I &hellip; <a href=\"https:\/\/www.bigroom.org\/wordpress\/?p=30\" class=\"more-link\">Continue reading <span class=\"screen-reader-text\">Curse you, public library!<\/span><\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[6,5,16,7],"tags":[],"class_list":["post-30","post","type-post","status-publish","format-standard","hentry","category-microbiology","category-nerdity","category-science-history","category-science-philosophy"],"_links":{"self":[{"href":"https:\/\/www.bigroom.org\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/30","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.bigroom.org\/wordpress\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.bigroom.org\/wordpress\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.bigroom.org\/wordpress\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.bigroom.org\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=30"}],"version-history":[{"count":0,"href":"https:\/\/www.bigroom.org\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/30\/revisions"}],"wp:attachment":[{"href":"https:\/\/www.bigroom.org\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=30"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.bigroom.org\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=30"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.bigroom.org\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=30"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}